Welcome to regrender documentation!

regrender is a Python package (adapted from allenCCF) for napari-based 2D registration of histology to the Allen CCF, ROI annotation on raw images, and brainrender reconstruction.

Features

• Interactive slice-to-atlas registration (regrender register).

• ROI annotation on raw images, projected into atlas space (regrender roi).

• Probe-track reconstruction (regrender probe).

Getting Started

Documentation

• Getting Started
  • Typical workflow